Prediction of microRNA target sites

Input examples: #1, #2, #3

To get context sensitive help, hover over the input fields on the left.

Specie:

Choose the species and the genome assembly version.

Score cut-off:

Choose the confidence level for the predictions.

MicroRNA:

Insert the microRNA you are interested in. Please use only the mature miRBase IDs of microRNAs without the species prefix. Set the species of interest in the selector box above.

Examples for human:

let-7a
miR-30a-5p
miR-182
miR-367

If you are not interesed in a specific microRNA, but in all microRNAs targeting the below specified transript, leave the field empty.

Transcript id (RefSeq):

Insert a transcript for which you want target sites predicted by typing in a RefSeq ID.

If you are not interesed in a specific transcript, but in all targets of the above specified microRNA, leave the field empty.

Seed requirement:

Choose wether you want only target sites with a perfect seed match returned, or also those that do no show a perfect seed match.